PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031252-PA
Common NameOsI_32365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 337aa    MW: 36421.1 Da    PI: 6.9497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031252-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.46.8e-1225130186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...ts 73 
                       +W+++ +  L+ea++ ++   +r+klk  +W +++  +                       ++p+qCk+k+e+++kry+++ + + +    + 
  BGIOSGA031252-PA  25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAT 117
                       5*******************************9999999999**********9977778899******************9988887633235 PP

          trihelix  74 essstcpyfdqle 86 
                       ++  ++++f +++
  BGIOSGA031252-PA 118 GAGPSWRFFARMD 130
                       5667899999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1323131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDALPDAADA APLAAAAPPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH  60
EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAATGAG  120
PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL  180
SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK  240
RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL  300
QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1030160.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329888820.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612002.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA2Z4000.0A2Z400_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA031252-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-45sequence-specific DNA binding transcription factors